Australian AI BioHub Australian AI BioHub

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Australian Institute for Machine Learning · Adelaide University

Where AI meets biosciences

An ecosystem for AI-enabled biological research, engineering, innovation and industry collaboration.

Foundational AI research, applied inside a health system — with methods depth, people who work across both sides, and access to live SA Health projects.

12
hospitals in our randomised trial
13
foundational AI capabilities
3
AI systems trialled or live in SA Health
42+
people doing medical AI at AIML

01

The unmet need

Australian and global bioresearch companies face critical barriers to AI adoption: talent scarcity and data access limitations. The demand for AI-skilled bioresearchers far exceeds supply, with companies struggling to recruit and retain professionals who understand both biological systems and machine learning applications.

Bioresearchers need AI expertise to stay current with rapidly advancing research methodologies, while companies require a single point of access to AI expertise and data to accelerate R&D without building capabilities in-house. Without systematic training and collaborative data platforms, Australian companies will struggle to compete with international counterparts who have better access to AI talent and integrated datasets.

01 / METHODS DEPTH

Five method themes with a clinical test: multimodal AI across images, text, sensors and omics; explainability clinicians can interrogate; generalisability across sites and scanners; small and noisy data; and causality. Published at NeurIPS, ICML, CVPR and ICCV — not applied AI assembled from other people's models.

02 / PEOPLE

Industry PhDs, embedded work on live projects and professional training build researchers fluent in both biology and machine learning.

03 / ACCESS

Live deployments inside SA Health, with the ethics, consent and Aboriginal-led data governance already running. Patient data cannot leave the network, so the work happens inside.

02

AI deployed in the clinic

Three systems trialled or live in SA Health, with the AI built here. Figures last checked September 2026.

Trial complete

2020–2025
12 hospitals

RAPIDx AI

The first AI-based randomised clinical trial for chest pain: decision support embedded in emergency-department workflow across twelve South Australian hospitals, six metropolitan and six rural, with 14,131 patients enrolled. The AI did not reduce cardiovascular death, MI or unplanned readmission at six months. It was safe, and it changed practice: patients not classified as type 1 MI were 47% less likely to undergo invasive angiography, and those classified as type 1 MI were more likely to receive guideline-directed therapy. Late-breaking research, ESC Congress 2024.

AI built by the group · NHMRC $1.23M, led by Flinders · SA Health · Siemens Healthineers · InterSystems · CEIH

Live · proof of value

2024–
3 emergency departments

AUScribe

A sovereign ambient AI clinical scribe, founded and led here. The entire pipeline runs inside SA Health's private cloud, because SA Health policy prohibits patient data leaving the network — which made commercial scribes unusable and building the only path. In proof-of-value deployment across three emergency departments with more than 50 clinicians using it, alongside a dedicated program measuring and correcting speech-recognition bias for Aboriginal patients under Aboriginal-led governance.

SA Digital Investment Fund $1M · MRFF extension $1.9M · CALHN · CEIH · Digital Health SA

Live from 2026

2023–2028
SA Pharmacy

AutoMedic — AI Pharmacy Review

Automated, nationally scalable medication-safety review over My Health Record data. The largest deployable AI project in SA Health, with the AI components built by the group.

MRFF NCRI $2.92M · SA Pharmacy

In development

2023–
CALHN

AI Cardiomics

A real-time dashboard for cardiovascular MBS and PBS insights, letting health services see unwarranted variation at population scale.

Supported by the Hospital Research Foundation

03

Mission & vision

Mission

To harness AI and South Australia's deep methods expertise at AIML to accelerate discoveries in biological research, enhance personalised solutions across industries, and create scalable innovations for global challenges.

Vision

To establish Australia as the epicentre for AI-driven innovation in the biological sciences and engineering, translating discoveries into tangible solutions for healthcare, agriculture, environmental sustainability and industry.

04

Strategic objectives

Across research, education and commercialisation.

R&D catalyst

Help companies and academia develop and deploy AI tools for faster, more accurate analysis of complex biological and engineering data.

Education

Upskill researchers and partners through industry PhDs, embedded projects and professional training, so they can use AI tools effectively to advance their work.

Commercialisation

Collaborate with industry and university partners to transform scientific innovations into market-ready products.

Community engagement

Build networks of scientists, engineers and medical professionals around major scientific challenges.

05

Key focus areas

Our interdisciplinary approach targets the most pressing challenges in biosciences and engineering. One area is operating, four are active, four are staged.

Operating

Health & clinical translation

Clinical AI built inside the health system rather than bought from outside, evaluated with randomised trials measuring system outcomes, and governed with consent, ethics and Aboriginal-led data arrangements already in place. Three systems so far: RAPIDx AI, AUScribe and AutoMedic.

A/Prof Johan Verjans · Dr Zhibin Liao · CALHN · SALHN · SA Pharmacy · CEIH

Active

AI in multiomics

Deploy machine learning to decode complex omics data, accelerating the discovery of genetic markers, disease mechanisms and therapeutic targets.

[TODO: lead]

Active

Digital pathology & imaging

Leverage computer vision and foundation models to automate analysis of histopathological images, improving diagnostic accuracy, throughput and consistency — and industrial process inspection.

[TODO: lead] · SA Pathology

Active

Precision medicine

Personalise treatment regimens using AI models that predict patient responses to therapies, improving outcomes and reducing healthcare costs.

[TODO: lead]

Active

Engineering & sensors

Support development of next-generation sensors and AI-enhanced devices for healthcare, environmental monitoring and industrial processes.

[TODO: lead]

Staged — next

Microbiome & drug discovery

AI-driven analysis of microbiome data to identify microbial consortia with therapeutic potential and expedite development of novel microbiome-based therapeutics. Pharma partners are already in place.

Needs a lead and a first grant round

Staged

Precision agriculture

Develop AI solutions for optimising agricultural productivity and sustainability through real-time monitoring of environmental factors and crop health.

Needs an anchor partner

Staged

AI for robotics & autonomous laboratories

Self-driving labs where AI proposes experiments, robotic platforms execute them and results retrain the models — plus field and clinical robotics for agriculture, biomanufacturing and care delivery.

Needs an anchor partner and a demonstrator

Staged

AI for quantum sensing

Quantum and photonic sensors produce faint, noisy, high-dimensional signals that only become useful with machine learning. We pair sensing capability with AI for signal extraction, calibration, drift correction and interpretation.

Needs an anchor partner; DST Group is the closest existing route

06

AI–Bio application matrix

Our structured approach connects core AI domains with application areas for targeted innovation. Read down a column to see what a domain can draw on; read across a row to see the transfer argument — a capability, held by a named person, proven in one domain and moving to the next.

Partially pre-filled. Health-column ratings come from published work and deployed systems; hover a cell for the evidence. All other cells remain “opportunity” until each capability lead sets them. Two of the five unassigned rows — signal processing and edge AI — are what the quantum sensing area depends on.
Core — named lead, live project Demonstrated Opportunity

07

Problem register

Real problems nominated by clinicians. Researchers and companies pick from this list.

Open

Emergency department handover documentation

Handover notes are inconsistent between shifts, and the gaps show up as repeated investigations. Structured capture at handover, in SNOMED CT.

EXAMPLE
Metropolitan ED
Data: EMR notes
Contact TBC
Open

Variation in troponin testing pathways

Adherence differs between metropolitan and rural sites. Quantify the variation, then identify where decision support would and would not help.

EXAMPLE
12 sites
Data: pathology + EMR
Contact TBC
Open

Medication reconciliation on discharge

Manual and time-critical. Where does automation reduce error, and where does it introduce new failure modes?

EXAMPLE
Statewide pharmacy
Data: dispensing records
Contact TBC
Scoping

Speech recognition accuracy for Aboriginal patients

Measure and correct recognition bias, with Aboriginal-led governance and data sovereignty as requirements rather than considerations.

EXAMPLE
SALHN EDs
Aboriginal-led governance
Contact TBC
Scoping

Digital pathology triage backlog

Slide review capacity is the constraint. Which cases can be safely ordered by a model, and what is the evidence bar for saying so?

EXAMPLE
SA Pathology
Data: WSI archive
Contact TBC
[TODO: replace with five real entries.] Each needs a named clinical champion, or the register goes stale within two months.

08

Learn

A curated list with judgement applied — not a course. Every entry has an owner and a review date.

For clinicians

Elements of AI

What these systems can and cannot do, without mathematics. The most common starting point.

U Helsinki · course
introductory · ~30 hrs · free
[verify link]

AI in Healthcare specialisation

Clinically framed: data, modelling and evaluation in care settings.

Stanford / Coursera
intro–intermediate
[verify link]

TRIPOD+AI

The reporting standard for prediction model studies. Read it before a vendor's evidence pack — it tells you what should be there.

BMJ · guideline
free · [verify link]

DECIDE-AI

Reporting guidance for early clinical evaluation of decision support — the stage most tools are actually at.

BMJ · guideline
free · [verify link]

Ethics and governance of AI for health

The reference document when a service is asked to adopt something quickly.

WHO · guidance
free · [verify link]

For researchers

Practical Deep Learning for Coders

Code-first. The fastest route from Python to working models for a domain researcher.

fast.ai · course
free · [verify link]

Dive into Deep Learning

Interactive textbook with runnable notebooks. For filling gaps rather than reading end to end.

d2l.ai · book
free · [verify link]

SPIRIT-AI and CONSORT-AI

Protocol and reporting standards for clinical trials of AI interventions. Start here before designing one.

Nature Medicine / BMJ
free · [verify link]

PhysioNet and MIMIC tutorials

Working with real de-identified critical care data, including access and credentialing.

MIT · tutorials
free · [verify link]

Scanpy tutorials

The standard single-cell workflow. Relevant to the multiomics work.

scverse · tutorials
free · [verify link]

For patients and the public

What AI in your care actually means

Where these tools are used, what they do, and what a clinician still decides.

[to draft] · plain language

What happens to your health data

Where it goes, where it doesn't, and why our systems run inside the SA Health network.

[to draft] · with CEIH

Questions you can ask about an AI tool

A short list you can take to an appointment.

[to draft] · plain language

Aboriginal data sovereignty, in plain language

What it means, and how it shapes the way we build.

[to draft] · with governance group

These pages do not replace talking to your clinician.

09

Tools & tricks

Open source only, grouped by task. The notes are the point — a list of links to well-known repositories helps nobody.

De-identification

presidio

Configurable PII detection and anonymisation. The default recognisers are US-centric — Medicare numbers, IHIs, URNs and Australian address formats need custom recognisers, and that work is where the accuracy actually comes from.

MIT · evaluated

stanza / scispacy

Clinical and biomedical NLP pipelines, useful as the entity layer under de-identification. scispaCy is trained on biomedical literature, not clinical notes — expect a drop on ward documentation.

Apache-2.0 · evaluated

Speech recognition

whisper / faster-whisper / whisperx

Whisper hallucinates confidently on silence and cross-talk, which is exactly what a consultation recording contains. Voice activity detection before transcription matters more than model size. Accent performance must be measured on your own population, not assumed from published benchmarks.

MIT · in production

Running models inside a restricted network

vllm

Throughput-oriented serving for self-hosted models. In a private cloud the constraint is GPU memory and concurrency planning, not raw model quality.

Apache-2.0 · evaluated

ollama / llama.cpp

Local prototyping, and useful for showing a governance committee that nothing leaves the machine.

MIT · evaluated

Standards and terminology

hapi-fhir

Reference FHIR implementation. Structured output is what downstream tools stand on — a scribe that emits free text only is a dead end.

Apache-2.0 · evaluated

snowstorm

SNOMED CT terminology server. Licensing for SNOMED itself is separate from the software and needs checking early, not late.

Apache-2.0 · evaluated

ohdsi / omop-cdm

Worth adopting if you will ever want to run the same analysis across more than one health service.

Apache-2.0 · evaluated

Imaging

monai

Medical imaging deep learning framework with sensible defaults for 3D data and transforms.

Apache-2.0 · evaluated

nnu-net

Self-configuring segmentation. Beat it before you build something custom; most of the time you won't.

Apache-2.0 · evaluated

Evaluation, fairness and reproducibility

fairlearn

Subgroup performance assessment. The subgroups that matter are the ones the training data under-represents — measure before deployment, not after a complaint.

MIT · evaluated

mlflow / dvc

Experiment and data versioning. A governance committee will ask which model version produced a given output, and you need to be able to answer.

Apache-2.0 · evaluated

Licences and versions are confirmed at adoption. “In production” means we run it; everything else has been evaluated only.

10

Our team

Bringing together expertise in AI and the biosciences.

A/Prof Johan Verjans

DIRECTOR

Clinical trials, digital health, medical AI

Dr Zhibin Liao

CO-DIRECTOR

Explainable AI, multi-modal AI

Dr Nisha Schwarz

OPERATIONS & STRATEGY

Strategic planning and operational excellence

AIML faculty

A/Prof Qi Wu

Embodied AI

A/Prof Feras Dayoub

Robotics & intelligent automation

Prof Javen Shi

Causal AI

Prof Minh Hoai Nguyen

Computer vision

A/Prof Lingqiao Liu

Generative AI

Affiliate faculty

Open to clinicians and researchers

AIML engineering team

The Australian Institute for Machine Learning is home to one of the most respected applied AI engineering teams in the country. This award-winning team has been instrumental in translating machine learning research into real-world applications across healthcare, agriculture, advanced manufacturing and defence.

With deep expertise in software engineering, computer vision, natural language processing and scalable AI systems, the team bridges the gap between research and implementation.

Key capabilities

  • —AI tools for medical diagnostics
  • —Large-scale vision systems for manufacturing quality control
  • —Advanced models for agricultural yield prediction
  • —Training the next generation of AI professionals
  • —Technical backbone for scalable, secure AI solutions

11

Collaborative network

We partner with leading institutions and companies to drive innovation at the intersection of AI and the biosciences.

International industry

GSK
Medtronic
Sanofi
Amgen
Roche
Siemens Healthineers
UMC Groningen

Local collaborators

LBT Innovations
Signostics
Ferronova
BioMeBank
+ yours

Health institutions, defence and academia

SA Health
SA Pathology
SA Pharmacy
Digital Health SA
CEIH
CALHN
SALHN
NALHN
DST Group
Centre for Augmented Reasoning
SAHMRI
Royal Adelaide Hospital
Heart Foundation
Flinders University
Hospital Research Foundation

12

Impact & future directions

The Hub contributes to Australia's leadership in AI-driven research and innovation across biomedical, environmental and engineering domains — improving outcomes, reducing the burden of disease, enhancing environmental sustainability, and driving economic growth through the development of new technologies.

The Hub is not just a research centre. It is a movement toward a smarter, healthier and more sustainable future powered by artificial intelligence.

Future goals

Forming strategic alliances

With international research centres, to expand our global reach and impact.

Securing additional funding

From government, industry and philanthropic sources, to scale our initiatives.

Facilitating technology transfer

And commercialisation of AI innovations, to maximise real-world impact.

Promoting upskilling in AI

Through education, to build Australia's AI talent pipeline.

13

Get involved

Two ways in: refine an existing collaboration, or bring a new partner-defined challenge.

Location

Australian Institute for Machine Learning
Lot Fourteen, North Terrace, Adelaide SA 5000

Email

biohub@adelaide.edu.au

Phone

+61 8 8313 3051

Governance

Overseen by the Hub Governance Committee, accountable to funders and Adelaide University.